Info • Lipomyces suomiensis NRRL Y-17356 v1.0

Status

[July 2022] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 14.00
Sequencing read coverage depth 423.91x
# of contigs 40
# of scaffolds 36
# of scaffolds >= 2Kbp 33
Scaffold N50 7
Scaffold L50 (Mbp) 0.90
# of gaps 4
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.61, 1.30, 1.01


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 19907 19415 97.5%
Ests est.fasta 198255444 196665475 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1892 1662
transcript 1755 1543
exon 598 344
intron 73 63
description:
protein length (aa) 485 413
exons per gene 2.93 3
# of gene models 6130


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.