Info • Lipomyces tetrasporus NRRL Y-64009 v1.0

Status

[February 2022] The Lipomyces tetrasporus NRRL Y-64009 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 20.78
Sequencing read coverage depth 267.54x
# of contigs 18
# of scaffolds 18
# of scaffolds >= 2Kbp 18
Scaffold N50 5
Scaffold L50 (Mbp) 1.74
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.72, 2.48, 2.02


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 26571 23396 88.1%
Ests est.fasta 60159874 59739720 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1730 1510
transcript 1592 1381
exon 518 312
intron 69 57
description:
protein length (aa) 441 364
exons per gene 3.07 3
# of gene models 8004


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.