Status
[February 2022] The Lipomyces tetrasporus NRRL Y-64009 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 20.78 |
| Sequencing read coverage depth | 267.54x |
| # of contigs | 18 |
| # of scaffolds | 18 |
| # of scaffolds >= 2Kbp | 18 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 1.74 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.72, 2.48, 2.02 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 26571 | 23396 | 88.1% |
| Ests | est.fasta | 60159874 | 59739720 | 99.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1730 | 1510 |
| transcript | 1592 | 1381 |
| exon | 518 | 312 |
| intron | 69 | 57 |
| description: | ||
| protein length (aa) | 441 | 364 |
| exons per gene | 3.07 | 3 |
| # of gene models | 8004 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Jagtap SS, Liu J-J, Walukiewicz HE, Pangilinan J, Lipzen A, Ahrendt S, Koriabine M, Cobaugh K, Salamov A, Yoshinaga Y, Ng V, Daum C, Grigoriev IV, Slininger PJ, Dien BS, Jin Y-S, Rao CV
Near-complete genome sequence of Lipomyces tetrasporous NRRL Y-64009, an oleaginous yeast capable of growing on lignocellulosic hydrolysates.
Microbiol Resour Announc. 2023 Oct 31;():e0042623. doi: 10.1128/MRA.00426-23
Jagtap SS, Liu J-J, Walukiewicz HE, Pangilinan J, Lipzen A, Ahrendt S, Koriabine M, Cobaugh K, Salamov A, Yoshinaga Y, Ng V, Daum C, Grigoriev IV, Slininger PJ, Dien BS, Jin Y-S, Rao CV
Near-complete genome sequence of Lipomyces tetrasporous NRRL Y-64009, an oleaginous yeast capable of growing on lignocellulosic hydrolysates.
Microbiol Resour Announc. 2023 Oct 31;():e0042623. doi: 10.1128/MRA.00426-23
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
