Info • Lipomyces japonicus NRRL Y-11784 v1.0

Status

[May 2024] The Lipomyces japonicus NRRL Y-11784 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 13.37
Sequencing read coverage depth 488.3x
# of contigs 182
# of scaffolds 175
# of scaffolds >= 2Kbp 150
Scaffold N50 20
Scaffold L50 (Mbp) 0.24
# of gaps 7
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.62, 0.50, 0.49


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 20382 19288 94.6%
Ests est.fasta 200150631 197421314 98.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1890 1664
transcript 1755 1539
exon 620 342
intron 76 65
description:
protein length (aa) 469 391
exons per gene 2.83 2
# of gene models 5875


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.