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Info • Lentinula lateritia TMI1499 v1.0

Status

[August 2019] The Lentinula lateritia TMI1499 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lentinula lateritia TMI1499 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.93
Sequencing read coverage depth 193.782779842745x
# of contigs 2712
# of scaffolds 2665
# of scaffolds >= 2Kbp 2058
Scaffold N50 250
Scaffold L50 (Mbp) 0.04
# of gaps 47
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.43, 0.36, 0.32


Gene Models FilteredModels1
length (bp) of: average median
gene 1644 1372
transcript 1295 1059
exon 215 134
intron 71 58
description:
protein length (aa) 432 353
exons per gene 6.04 5
# of gene models 12629


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.