Status
The genome sequence and gene prediction of Lodderomyces elongisporus have not been determined by the JGI, but were downloaded from NCBI on Oct 26, 2016. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Lodderomyces elongisporus NRRL
YB-4239 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 15.35 |
| Sequencing read coverage depth | |
| # of contigs | 128 |
| # of scaffolds | 11 |
| # of scaffolds >= 2Kbp | 11 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 2.01 |
| # of gaps | 117 |
| % of scaffold length in gaps | 0.6% |
| Three largest Scaffolds (Mbp) | 3.55, 2.57, 2.01 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1533 | 1269 |
| transcript | 1530 | 1266 |
| exon | 1516 | 1254 |
| intron | 352 | 260 |
| description: | ||
| protein length (aa) | 510 | 422 |
| exons per gene | 1.01 | 1 |
| # of gene models | 5746 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, Agrafioti I, Arnaud MB, Bates S, Brown AJ, Brunke S, Costanzo MC, Fitzpatrick DA, de Groot PW, Harris D, Hoyer LL, Hube B, Klis FM, Kodira C, Lennard N, Logue ME, Martin R, Neiman AM, Nikolaou E, Quail MA, Quinn J, Santos MC, Schmitzberger FF, Sherlock G, Shah P, Silverstein KA, Skrzypek MS, Soll D, Staggs R, Stansfield I, Stumpf MP, Sudbery PE, Srikantha T, Zeng Q, Berman J, Berriman M, Heitman J, Gow NA, Lorenz MC, Birren BW, Kellis M, Cuomo CA
Evolution of pathogenicity and sexual reproduction in eight Candida genomes.
Nature. 2009 Jun 4;459(7247):657-62. doi: 10.1038/nature08064
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, Agrafioti I, Arnaud MB, Bates S, Brown AJ, Brunke S, Costanzo MC, Fitzpatrick DA, de Groot PW, Harris D, Hoyer LL, Hube B, Klis FM, Kodira C, Lennard N, Logue ME, Martin R, Neiman AM, Nikolaou E, Quail MA, Quinn J, Santos MC, Schmitzberger FF, Sherlock G, Shah P, Silverstein KA, Skrzypek MS, Soll D, Staggs R, Stansfield I, Stumpf MP, Sudbery PE, Srikantha T, Zeng Q, Berman J, Berriman M, Heitman J, Gow NA, Lorenz MC, Birren BW, Kellis M, Cuomo CA
Evolution of pathogenicity and sexual reproduction in eight Candida genomes.
Nature. 2009 Jun 4;459(7247):657-62. doi: 10.1038/nature08064
Funding
This project was not sequenced at the JGI.
