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Info • Mytilinidiaceae sp. NC0267 v1.0

Status

[December 2018] The Mytilinidiaceae sp. NC0267 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Mytilinidiaceae sp. NC0267 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.90
Sequencing read coverage depth 156.347908144x
# of contigs 84
# of scaffolds 70
# of scaffolds >= 2Kbp 65
Scaffold N50 11
Scaffold L50 (Mbp) 1.21
# of gaps 14
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.61, 1.94, 1.75


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35544 35402 99.6%
Ests est.fasta 119408180 119076954 99.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1853 1636
transcript 1685 1467
exon 538 335
intron 81 58
description:
protein length (aa) 475 395
exons per gene 3.13 3
# of gene models 12216


Collaborators

Jana U'Ren, University of Arizona, AZ

Betsy Arnold, University of Arizona, AZ

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.