Info • Lophiostoma macrostomum v1.0


[August 2013] The Lophiostoma macrostomum genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R42328 (Gnerre et al., 2010).

Summary statistics for the Lophiostoma macrostomum CBS 122681 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.58
Sequencing read coverage depth 140.3x
# of contigs 1294
# of scaffolds 1282
# of scaffolds >= 2Kbp 711
Scaffold N50 75
Scaffold L50 (Mbp) 0.16
# of gaps 12
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.92, 0.91, 0.63

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 33611 32855 97.8%

Gene Models FilteredModels1
length (bp) of: average median
gene 1628 1400
transcript 1482 1269
exon 540 343
intron 86 57
protein length (aa) 433 357
exons per gene 2.74 2
# of gene models 16160


Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.