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Info • Peniophora sp. CONTA v1.0

Status

[April 2015] The Peniophora sp. CONTA genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Peniophora sp. CONTA v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.44
Sequencing read coverage depth 85.8x
# of contigs 487
# of scaffolds 217
# of scaffolds >= 2Kbp 175
Scaffold N50 14
Scaffold L50 (Mbp) 0.92
# of gaps 270
% of scaffold length in gaps 0.7%
Three largest Scaffolds (Mbp) 6.77, 2.47, 1.99


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 30619 30451 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1772 1570
transcript 1501 1316
exon 288 170
intron 67 56
description:
protein length (aa) 434 364
exons per gene 5.21 4
# of gene models 18999


Collaborators

Dr. Allison Walker, Acacia University, Canada

Dr. Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.