Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
Info • Lophodermium piceae NOR1-14_p44 v1.0


[March 2020] The Lophodermium piceae NOR1-14_p44 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lophodermium piceae NOR1-14_p44 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 60.58
Sequencing read coverage depth 386.17x
# of contigs 552
# of scaffolds 552
# of scaffolds >= 2Kbp 552
Scaffold N50 67
Scaffold L50 (Mbp) 0.25
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.45, 1.23, 1.04

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 49958 48163 96.4%
Ests est.fasta 73655679 72771852 98.8%

Gene Models FilteredModels1
length (bp) of: average median
gene 1823 1586
transcript 1597 1384
exon 488 304
intron 101 62
protein length (aa) 458 379
exons per gene 3.27 3
# of gene models 14839



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.