Info • Loramyces macrosporus CBS235.53 v1.0


[March 2016] The Loramyces macrosporus CBS235.53 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Loramyces macrosporus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 50.59
Sequencing read coverage depth 95.1x
# of contigs 724
# of scaffolds 91
# of scaffolds >= 2Kbp 73
Scaffold N50 13
Scaffold L50 (Mbp) 1.52
# of gaps 633
% of scaffold length in gaps 1.2%
Three largest Scaffolds (Mbp) 2.84, 2.74, 2.65

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44249 42502 96.1%
Ests est.fasta 114918127 107690175 93.7%

Gene Models FilteredModels1
length (bp) of: average median
gene 1620 1374
transcript 1456 1224
exon 481 300
intron 83 56
protein length (aa) 425 344
exons per gene 3.02 3
# of gene models 14665


Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.