Info • Lottia gigantea


v1.0 (July 24, 2007): This Lottia gigantea genome sequence was assembled using the JGI assembler, Jazz, constructed from whole genome shotgun and paired end sequencing reads. The nuclear genome sequence from the finished assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses, reported here as the Lotgi1 annotation.

Summary statistics for the 1.0 release (Lotgi1):

Nuclear Genome Assembly: Lotgi1
Nuclear genome size (Mbp) 359.5
Sequencing read coverage depth 8.87x
Reported # of contigs 20,146
# of nuclear scaffolds 4,475
# of nuclear scaffolds >2 Kbp 2,631
Nuclear scaffold N/L50 51/1.87 Mbp
Three largest Scaffolds (Mbp)
ESTs: Data set # sequences total # mapped to genome # not mapped to genome % mapped to genome
EST clusters EstClusters_naClusterCr705LottiaJgi20060727 38,599 35,832 2,767 93%
ESTs Ests_naEstLottiaJgi20060727 252,091 231,940 20,151 92%
Gene Models: Lotgi11
length (bp) of: average
gene 5,234
transcript 1,286
exon 213
intron 787
protein length (aa) 378
exons per gene 6.0
# of gene models 23,851
[1] FilteredModels Version1.0 gene model track

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.