Info • Lentinula raphanica INPA1820 v1.0

Status

[February 2019] The Lentinula raphanica INPA1820 genome was sequenced with Illumina technology, assembled sequentially with Velvet and AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lentinula raphanica INPA1820 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.94
Sequencing read coverage depth 145.8x
# of contigs 1633
# of scaffolds 1356
# of scaffolds >= 2Kbp 1085
Scaffold N50 150
Scaffold L50 (Mbp) 0.08
# of gaps 277
% of scaffold length in gaps 0.6%
Three largest Scaffolds (Mbp) 0.45, 0.42, 0.37


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 63606 57236 90.0%
Ests est.fasta 302859801 281625895 93.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1786 1544
transcript 1467 1264
exon 249 152
intron 67 58
description:
protein length (aa) 426 349
exons per gene 5.90 5
# of gene models 14931


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.