Info • Lentinula raphanica TFB9207 v1.0

Status

[April 2019] The Lentinula raphanica TFB9207 genome was sequenced with Illumina technology, assembled sequentially with Velvet and AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lentinula raphanica TFB9207 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.63
Sequencing read coverage depth 142.6x
# of contigs 2514
# of scaffolds 2318
# of scaffolds >= 2Kbp 1765
Scaffold N50 272
Scaffold L50 (Mbp) 0.04
# of gaps 196
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 0.23, 0.19, 0.17


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46552 41499 89.1%
Ests est.fasta 215463989 200092503 92.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1763 1516
transcript 1448 1244
exon 247 152
intron 67 58
description:
protein length (aa) 421 344
exons per gene 5.86 5
# of gene models 14798


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.