Status
[May 2024] The Lipomyces starkeyi NRRL Y-1388 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 20.23 |
| Sequencing read coverage depth | 356.6x |
| # of contigs | 531 |
| # of scaffolds | 514 |
| # of scaffolds >= 2Kbp | 447 |
| Scaffold N50 | 35 |
| Scaffold L50 (Mbp) | 0.15 |
| # of gaps | 17 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.79, 0.52, 0.50 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 34120 | 32288 | 94.6% |
| Ests | est.fasta | 326507015 | 324665332 | 99.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1921 | 1709 |
| transcript | 1781 | 1580 |
| exon | 577 | 347 |
| intron | 69 | 58 |
| description: | ||
| protein length (aa) | 443 | 369 |
| exons per gene | 3.08 | 3 |
| # of gene models | 7724 |
Collaborators
- Kyle Pomraning, Pacific Northwest National Laboratory, WA
- Scott Baker, Environmental Molecular Science Laboratory, WA
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Lipomycetaceae Lipomyces
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
