Status
[November 2023] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 20.22 |
| Sequencing read coverage depth | 361.22x |
| # of contigs | 529 |
| # of scaffolds | 515 |
| # of scaffolds >= 2Kbp | 449 |
| Scaffold N50 | 35 |
| Scaffold L50 (Mbp) | 0.15 |
| # of gaps | 14 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.56, 0.52, 0.50 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 49476 | 35916 | 72.6% |
| Ests | est.fasta | 201429327 | 198561963 | 98.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1734 | 1524 |
| transcript | 1595 | 1383 |
| exon | 512 | 299 |
| intron | 67 | 57 |
| description: | ||
| protein length (aa) | 440 | 364 |
| exons per gene | 3.12 | 3 |
| # of gene models | 7787 |
Collaborators
- Kyle Pomraning, Pacific Northwest National Laboratory, WA
- Scott Baker, Environmental Molecular Science Laboratory, WA
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Lipomycetaceae Lipomyces
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
