Info • Lipomyces starkeyi NRRL YB-3534 v1.0

Status

[May 2024] The Lipomyces starkeyi NRRL YB-3534 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 20.02
Sequencing read coverage depth 342.35x
# of contigs 423
# of scaffolds 404
# of scaffolds >= 2Kbp 336
Scaffold N50 25
Scaffold L50 (Mbp) 0.20
# of gaps 19
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.77, 0.73, 0.72


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 27814 26387 94.9%
Ests est.fasta 202286721 200276178 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1882 1680
transcript 1744 1548
exon 567 340
intron 68 57
description:
protein length (aa) 441 368
exons per gene 3.08 3
# of gene models 7699


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.