Info • Lipomyces starkeyi CBS 7536 v1.0

Status

[September 2023] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 20.36
Sequencing read coverage depth 319.32x
# of contigs 383
# of scaffolds 365
# of scaffolds >= 2Kbp 307
Scaffold N50 25
Scaffold L50 (Mbp) 0.25
# of gaps 18
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.79, 0.67, 0.61


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30830 29233 94.8%
Ests est.fasta 126616640 124311254 98.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1743 1548
transcript 1607 1408
exon 524 314
intron 68 57
description:
protein length (aa) 439 366
exons per gene 3.07 3
# of gene models 7864


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.