Info • Lipomyces starkeyi CBS 7851 v1.0

Status

[September 2023] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 19.72
Sequencing read coverage depth 334.41x
# of contigs 333
# of scaffolds 323
# of scaffolds >= 2Kbp 289
Scaffold N50 28
Scaffold L50 (Mbp) 0.22
# of gaps 10
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.64, 0.58, 0.55


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 29199 27996 95.9%
Ests est.fasta 192950068 191714115 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1758 1548
transcript 1621 1417
exon 526 312
intron 67 57
description:
protein length (aa) 443 369
exons per gene 3.08 3
# of gene models 7581


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.