Info • Lipomyces starkeyi CBS 8064 v1.0

Status

[September 2023] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 18.44
Sequencing read coverage depth 354.53x
# of contigs 289
# of scaffolds 277
# of scaffolds >= 2Kbp 246
Scaffold N50 23
Scaffold L50 (Mbp) 0.26
# of gaps 12
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.98, 0.63, 0.53


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28079 26704 95.1%
Ests est.fasta 195734720 194314776 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1780 1557
transcript 1641 1422
exon 528 313
intron 68 57
description:
protein length (aa) 449 372
exons per gene 3.11 3
# of gene models 7211


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.