Info • Lipomyces tetrasporus NRRL Y-27496 v1.0

Status

[November 2023] The Lipomyces tetrasporus NRRL Y-27496 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 20.92
Sequencing read coverage depth 315.78x
# of contigs 375
# of scaffolds 360
# of scaffolds >= 2Kbp 315
Scaffold N50 27
Scaffold L50 (Mbp) 0.22
# of gaps 15
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.82, 0.79, 0.64


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35352 27945 79.0%
Ests est.fasta 172809684 171125004 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1719 1503
transcript 1583 1379
exon 517 306
intron 68 57
description:
protein length (aa) 444 368
exons per gene 3.06 3
# of gene models 8124


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.