Info • Lipomyces yamadae CBS 7532 v1.0

Status

[May 2024] The Lipomyces yamadae CBS 7532 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 16.81
Sequencing read coverage depth 381.27x
# of contigs 217
# of scaffolds 208
# of scaffolds >= 2Kbp 180
Scaffold N50 22
Scaffold L50 (Mbp) 0.25
# of gaps 9
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.72, 0.58, 0.55


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28709 26845 93.5%
Ests est.fasta 338477619 335552219 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1963 1742
transcript 1817 1610
exon 575 340
intron 70 59
description:
protein length (aa) 458 383
exons per gene 3.16 3
# of gene models 7016


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.