Status
The genome sequence and gene prediction of Marssonina brunnea f. sp. multigermtubi NL1 have not been determined by the Joint Genome Institute (JGI), but were provided by Qiang Cheng on August 20, 2020. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by Qiang Cheng and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Marssonina brunnea f. sp.
monogermtubi NL1 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 50.29 |
| Sequencing read coverage depth | 1x |
| # of contigs | 1105 |
| # of scaffolds | 1105 |
| # of scaffolds >= 2Kbp | 892 |
| Scaffold N50 | 130 |
| Scaffold L50 (Mbp) | 0.11 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.50, 0.48, 0.46 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1623 | 1354 |
| transcript | 1438 | 1179 |
| exon | 451 | 237 |
| intron | 86 | 62 |
| description: | ||
| protein length (aa) | 479 | 393 |
| exons per gene | 3.19 | 3 |
| # of gene models | 9852 |
Collaborators
- Qiang Cheng, Nanjing Forestry University, China
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Leotiomycetes Helotiales
Funding
This project was not sequenced at the JGI.
