Info • Madurella mycetomatis mm55

Status

The genome sequence and gene models of Madurella mycetomatis mm55 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Madurella mycetomatis mm55 are below.
Genome Assembly
Genome Assembly size (Mbp) 36.70
Sequencing read coverage depth 43.5x
# of contigs 824
# of scaffolds 804
# of scaffolds >= 2Kbp 771
Scaffold N50 144
Scaffold L50 (Mbp) 0.08
# of gaps 20
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.58, 0.46, 0.25


Gene Models ExternalModels
length (bp) of: average median
gene 1641 1379
transcript 1488 1227
exon 529 291
intron 87 65
description:
protein length (aa) 496 409
exons per gene 2.81 2
# of gene models 10707


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Smit S, Derks MF, Bervoets S, Fahal A, van Leeuwen W, van Belkum A, van de Sande WW
Genome Sequence of Madurella mycetomatis mm55, Isolated from a Human Mycetoma Case in Sudan.
Genome Announc. 2016 May 26;4(3):. doi: 10.1128/genomeA.00418-16

Funding

This project was not sequenced at the JGI.