Status
The genome of Magnaporthe grisea (Magnaporthe oryzae) strain 70-15 (MG8) was sequenced by the BROAD Institute. In order to allow comparative analyses with other fungi, a copy of the genome of M. grisea is incorporated into MycoCosm. It was downloaded from the website of the BROAD Institute on May 20th, 2011.
Summary statistics for the Magnaporthe grisea v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 41.70 |
| Sequencing read coverage depth | unknown |
| # of contigs | 906 |
| # of scaffolds | 30 |
| # of scaffolds >= 2Kbp | 30 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 2.89 |
| # of gaps | 876 |
| % of scaffold length in gaps | 0.4% |
| Three largest Scaffolds (Mbp) | 4.43, 4.26, 4.21 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1754 | 1503 |
| transcript | 1537 | 1300 |
| exon | 553 | 316 |
| intron | 124 | 90 |
| description: | ||
| protein length (aa) | 481 | 397 |
| exons per gene | 2.78 | 2 |
| # of gene models | 11054 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YH, Carbone I, Brown D, Oh YY, Donofrio N, Jeong JS, Soanes DM, Djonovic S, Kolomiets E, Rehmeyer C, Li W, Harding M, Kim S, Lebrun MH, Bohnert H, Coughlan S, Butler J, Calvo S, Ma LJ, Nicol R, Purcell S, Nusbaum C, Galagan JE, Birren BW
The genome sequence of the rice blast fungus Magnaporthe grisea.
Nature. 2005 Apr 21;434(7036):980-6. doi: 10.1038/nature03449
Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YH, Carbone I, Brown D, Oh YY, Donofrio N, Jeong JS, Soanes DM, Djonovic S, Kolomiets E, Rehmeyer C, Li W, Harding M, Kim S, Lebrun MH, Bohnert H, Coughlan S, Butler J, Calvo S, Ma LJ, Nicol R, Purcell S, Nusbaum C, Galagan JE, Birren BW
The genome sequence of the rice blast fungus Magnaporthe grisea.
Nature. 2005 Apr 21;434(7036):980-6. doi: 10.1038/nature03449
Funding
This project was not sequenced at the JGI.
