Info • Pyricularia oryzae 70-15 v3.0

Status

The genome sequence and gene prediction of Pyricularia oryzae 70-15 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Aug 1, 2019. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Pyricularia oryzae 70-15 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.49
Sequencing read coverage depth 1x
# of contigs 164
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 3
Scaffold L50 (Mbp) 6.61
# of gaps 157
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 8.32, 7.98, 6.61


Gene Models ExternalModels
length (bp) of: average median
gene 2028 1752
transcript 1810 1548
exon 648 367
intron 124 90
description:
protein length (aa) 440 358
exons per gene 2.79 2
# of gene models 12836


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YH, Carbone I, Brown D, Oh YY, Donofrio N, Jeong JS, Soanes DM, Djonovic S, Kolomiets E, Rehmeyer C, Li W, Harding M, Kim S, Lebrun MH, Bohnert H, Coughlan S, Butler J, Calvo S, Ma LJ, Nicol R, Purcell S, Nusbaum C, Galagan JE, Birren BW
The genome sequence of the rice blast fungus Magnaporthe grisea.
Nature. 2005 Apr 21;434(7036):980-6. doi: 10.1038/nature03449

Funding

This project was not sequenced at the JGI.