Status
This genome was sequenced by Annika Scheynius ([email protected]) et al. in Department of Medicine, Solna, Karolinska Institutet, Stockholm, Sweden (Genomic insights into the atopic eczema-associated skin commensal yeast Malassezia sympodialis). Please check their data use policies.
Summary statistics for the Malassezia sympodialis ATCC
42132 v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 7.67 |
Sequencing read coverage depth | 60x (454), 200x (HiSeq) |
# of contigs | 87 |
# of scaffolds | 65 |
# of scaffolds >= 2Kbp | 40 |
Scaffold N50 | 6 |
Scaffold L50 (Mbp) | 0.51 |
# of gaps | 22 |
% of scaffold length in gaps | 0.2% |
Three largest Scaffolds (Mbp) | 0.81, 0.75, 0.75 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1593 | 1332 |
transcript | 1530 | 1278 |
exon | 772 | 402 |
intron | 66 | 31 |
description: | ||
protein length (aa) | 510 | 426 |
exons per gene | 1.98 | 2 |
# of gene models | 3517 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Gioti A, Nystedt B, Li W, Xu J, Andersson A, Averette AF, Münch K, Wang X, Kappauf C, Kingsbury JM, Kraak B, Walker LA, Johansson HJ, Holm T, Lehtiö J, Stajich JE, Mieczkowski P, Kahmann R, Kennell JC, Cardenas ME, Lundeberg J, Saunders CW, Boekhout T, Dawson TL, Munro CA, de Groot PW, Butler G, Heitman J, Scheynius A
Genomic insights into the atopic eczema-associated skin commensal yeast Malassezia sympodialis.
mBio. 2013 Jan 22;4(1):e00572-12. doi: 10.1128/mBio.00572-12
Gioti A, Nystedt B, Li W, Xu J, Andersson A, Averette AF, Münch K, Wang X, Kappauf C, Kingsbury JM, Kraak B, Walker LA, Johansson HJ, Holm T, Lehtiö J, Stajich JE, Mieczkowski P, Kahmann R, Kennell JC, Cardenas ME, Lundeberg J, Saunders CW, Boekhout T, Dawson TL, Munro CA, de Groot PW, Butler G, Heitman J, Scheynius A
Genomic insights into the atopic eczema-associated skin commensal yeast Malassezia sympodialis.
mBio. 2013 Jan 22;4(1):e00572-12. doi: 10.1128/mBio.00572-12
Funding
This project was not sequenced at the JGI.