Info • Massariosphaeria phaeospora CBS 611.86 v1.0

Status

[October 2016] The Massariosphaeria phaeospora CBS 611.86 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Massariosphaeria phaeospora v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.11
Sequencing read coverage depth 98.23x
# of contigs 57
# of scaffolds 57
# of scaffolds >= 2Kbp 57
Scaffold N50 11
Scaffold L50 (Mbp) 1.34
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.98, 2.44, 2.31


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36504 34748 95.2%
Ests est.fasta 130405512 122568233 94.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1614 1368
transcript 1477 1239
exon 545 347
intron 82 57
description:
protein length (aa) 434 352
exons per gene 2.71 2
# of gene models 14021


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Haridas S., Albert R., Binder M., Bloem J., LaButti K., Salamov A., Andreopoulos B., Baker S.E., Barry K., Bills G., Bluhm B.H., Cannon C., Castanera R., Culley D.E., Daum C., Ezra D., González J.B., Henrissat B., Kuo A., Liang C., Lipzen A., Lutzoni F., Magnuson J., Mondo S.J., Nolan M., Ohm R.A., Pangilinan J., Park H.-J., Ramírez L., Alfaro M., Sun H., Tritt A., Yoshinaga Y., Zwiers L.-H., Turgeon B.G., Goodwin S.B., Spatafora J.W., Crous P.W., Grigoriev I.V.
101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens
Studies in Mycology. 2020;96:141-153. doi: 10.1016/j.simyco.2020.01.003

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.