Info • Meira miltonrushii MCA 3882 v1.0


[Jan 2015] The Meira miltonrushii MCA 3882 genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Meira miltonrushii MCA 3882 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 17.38
Sequencing read coverage depth 99.6x
# of contigs 117
# of scaffolds 32
# of scaffolds >= 2Kbp 26
Scaffold N50 2
Scaffold L50 (Mbp) 4.54
# of gaps 85
% of scaffold length in gaps 0.6%
Three largest Scaffolds (Mbp) 4.96, 4.54, 3.26

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 12007 11829 98.5%

Gene Models FilteredModels1
length (bp) of: average median
gene 1732 1452
transcript 1654 1389
exon 1018 633
intron 127 72
protein length (aa) 495 402
exons per gene 1.62 1
# of gene models 7452


Dr. Catherine Aime, Purdue University, IN

Dr. Joseph Spatafora, Oregon State University, USA

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.