Info • Melanotaenium endogenum CBS481.91 v1.0


[April 2016] The Melanotaenium endogenum CBS481.91 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Melanotaenium endogenum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 19.17
Sequencing read coverage depth 97.9x
# of contigs 316
# of scaffolds 87
# of scaffolds >= 2Kbp 73
Scaffold N50 9
Scaffold L50 (Mbp) 0.97
# of gaps 229
% of scaffold length in gaps 0.9%
Three largest Scaffolds (Mbp) 1.58, 1.52, 1.38

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 19866 18968 95.5%
Ests est.fasta 134205134 128172984 95.5%

Gene Models FilteredModels1
length (bp) of: average median
gene 2046 1737
transcript 1855 1522
exon 705 339
intron 119 101
protein length (aa) 547 436
exons per gene 2.63 2
# of gene models 6624


Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.