Status
The genome sequence and gene prediction of Melampsora lini CH5 have not been determined by the JGI, but were provided by Nemri et al., 2014 on Feb 23, 2015. Please note that this copy of the genome is not maintained by the authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Melampsora lini CH5 release are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 189.52 |
| Sequencing read coverage depth | 1x |
| # of contigs | 44083 |
| # of scaffolds | 21310 |
| # of scaffolds >= 2Kbp | 10408 |
| Scaffold N50 | 1797 |
| Scaffold L50 (Mbp) | 0.03 |
| # of gaps | 22773 |
| % of scaffold length in gaps | 14.1% |
| Three largest Scaffolds (Mbp) | 0.24, 0.19, 0.18 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1879 | 1167 |
| transcript | 1275 | 910 |
| exon | 297 | 185 |
| intron | 185 | 82 |
| description: | ||
| protein length (aa) | 379 | 256 |
| exons per gene | 4.29 | 3 |
| # of gene models | 16335 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Nemri A, Saunders DG, Anderson C, Upadhyaya NM, Win J, Lawrence GJ, Jones DA, Kamoun S, Ellis JG, Dodds PN
The genome sequence and effector complement of the flax rust pathogen Melampsora lini.
Front Plant Sci. 2014;5():98. doi: 10.3389/fpls.2014.00098
Nemri A, Saunders DG, Anderson C, Upadhyaya NM, Win J, Lawrence GJ, Jones DA, Kamoun S, Ellis JG, Dodds PN
The genome sequence and effector complement of the flax rust pathogen Melampsora lini.
Front Plant Sci. 2014;5():98. doi: 10.3389/fpls.2014.00098
Funding
This project was not sequenced at the JGI.
