Info • Melampsora lini CH5

Status

The genome sequence and gene prediction of Melampsora lini CH5 have not been determined by the JGI, but were provided by Nemri et al., 2014 on Feb 23, 2015. Please note that this copy of the genome is not maintained by the authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Melampsora lini CH5 release are below.
Genome Assembly
Genome Assembly size (Mbp) 189.52
Sequencing read coverage depth 1x
# of contigs 44083
# of scaffolds 21310
# of scaffolds >= 2Kbp 10408
Scaffold N50 1797
Scaffold L50 (Mbp) 0.03
# of gaps 22773
% of scaffold length in gaps 14.1%
Three largest Scaffolds (Mbp) 0.24, 0.19, 0.18


Gene Models ExternalModels
length (bp) of: average median
gene 1879 1167
transcript 1275 910
exon 297 185
intron 185 82
description:
protein length (aa) 379 256
exons per gene 4.29 3
# of gene models 16335


Genome Reference(s)

Funding

This project was not sequenced at the JGI.