Status
[January 2023] The genome sequence of Melampsora lini version 2.0 was not determined by the JGI.
The genome sequence was assembled from HiFi data.
The genome was provided by CSIRO on May 2022. The annotation was done by Emmanuelle Morin of INRAE using the JGI Annotation Pipeline.
This copy of the genome does include the mitochondrial chromosome or genes.
Summary statistics for the Melampsora lini v2.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 239.95 |
| Sequencing read coverage depth | 40x |
| # of contigs | 167 |
| # of scaffolds | 165 |
| # of scaffolds >= 2Kbp | 165 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 12.96 |
| # of gaps | 2 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 18.98, 17.94, 17.48 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 794934809 | 791821804 | 99.6% |
| Other | Melli2_RNA_contigs | 106230 | 74841 | 70.5% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1592 | 1321 |
| transcript | 1211 | 975 |
| exon | 267 | 163 |
| intron | 110 | 81 |
| description: | ||
| protein length (aa) | 350 | 265 |
| exons per gene | 4.54 | 4 |
| # of gene models | 17015 |
Links
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Pucciniomycotina Pucciniales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
