Info • Melanconium sp. NRRL 54901 v1.0

Status

The Melanconium sp NRRL 54901 genome was sequenced using the Illumina platform, assembled with AllPathsLG, and annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Melanconium sp. NRRL 54901 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 58.52
Sequencing read coverage depth 92.8
# of contigs 465
# of scaffolds 100
# of scaffolds >= 2Kbp 74
Scaffold N50 9
Scaffold L50 (Mbp) 1.94
# of gaps 365
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 5.42, 4.25, 3.59


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other RNAseqContigs 48610 38344 78.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1644 1365
transcript 1419 1181
exon 530 325
intron 136 73
description:
protein length (aa) 419 338
exons per gene 2.68 2
# of gene models 16656


Collaborators

Joey Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.