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Info • Melanospora tiffanyae F1KG0001 v1.0

Status

[May 2015] The Melanospora tiffanyae F1KG0001 genome was sequenced using Illumina and assembled using AllPathsLG (Gnerre et al. 2010).

 

Summary statistics for the Melanospora tiffanyae F1KG0001 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 28.36
Sequencing read coverage depth 136.7
# of contigs 510
# of scaffolds 420
# of scaffolds >= 2Kbp 383
Scaffold N50 50
Scaffold L50 (Mbp) 0.17
# of gaps 90
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.61, 0.49, 0.45


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 28699 27114 94.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1658 1355
transcript 1512 1220
exon 608 385
intron 100 67
description:
protein length (aa) 428 331
exons per gene 2.49 2
# of gene models 8994


Collaborators

Derek Johnson, Oregon State University

Joey Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.