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Info • Meredithblackwellia eburnea MCA 4105 v1.0

Status

[August 2015] The Meredithblackwellia eburnea MCA 4105 genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R47710, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Meredithblackwellia eburnea MCA 4105 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.68
Sequencing read coverage depth 112.0x
# of contigs 201
# of scaffolds 52
# of scaffolds >= 2Kbp 45
Scaffold N50 7
Scaffold L50 (Mbp) 1.33
# of gaps 149
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 3.96, 2.59, 2.52


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 23249 22817 98.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 2161 1868
transcript 1603 1361
exon 220 135
intron 91 76
description:
protein length (aa) 469 387
exons per gene 7.28 6
# of gene models 11135


Collaborators

 Dr. Catherine Aime, Purdue University, IN

Dr. Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.