Info • Metschnikowia bicuspidata single-cell v1.0


[January 2018] The Metschnikowia bicuspidata genome was sequenced with Illumina and assembled with Spades. Pooled libraries were annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Metschnikowia bicuspidata single-cell v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 10.95
Sequencing read coverage depth 159.6x
# of contigs 482
# of scaffolds 478
# of scaffolds >= 2Kbp 181
Scaffold N50 23
Scaffold L50 (Mbp) 0.15
# of gaps 4
% of scaffold length in gaps 3.4%
Three largest Scaffolds (Mbp) 0.65, 0.60, 0.37

Gene Models FilteredModels1
length (bp) of: average median
gene 1363 1116
transcript 1313 1077
exon 917 675
intron 119 65
protein length (aa) 438 359
exons per gene 1.43 1
# of gene models 4778


Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.