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Info • Metschnikowia pulcherrima NRRL Y-7111 v1.0

Status

[December 2020] The Metschnikowia pulcherrima NRRL Y-7111 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

This assembly is likely partially diploid, and this is reflected in an assembly and annotation with significant separation of alleles. To represent these primary and secondary haplotypes in the Portal, we have created 'primary alleles' and 'secondary alleles' gene model tracks, comprising the models found on each haplotype. The goal of the GeneCatalog (GC) is to produce a non-redundant set of models which captures the full functional repertoire of the genome, and so the few secondary alleles that are unique were included in the GC, while all others were not.

Summary statistics for the Metschnikowia pulcherrima NRRL Y-7111 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 21.18
Sequencing read coverage depth 643.11x
# of contigs 140
# of scaffolds 140
# of scaffolds >= 2Kbp 139
Scaffold N50 6
Scaffold L50 (Mbp) 1.06
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.69, 2.17, 1.63


Gene Models FilteredModels2
length (bp) of: average median
gene 1468 1218
transcript 1406 1161
exon 876 631
intron 104 51
description:
protein length (aa) 469 387
exons per gene 1.61 1
# of gene models 5885


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.