Info • Metschnikowia sp. nov. yHQL305 v1.1


[August 2021] The Metschnikowia sp. yHQL305 v1.1 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section. In contrast to the v1.0 portal, this annotation has been improved through use of new RNAseq data.

Genome Assembly
Genome Assembly size (Mbp) 17.69
Sequencing read coverage depth 425.09x
# of contigs 33
# of scaffolds 33
# of scaffolds >= 2Kbp 33
Scaffold N50 3
Scaffold L50 (Mbp) 3.18
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.76, 3.57, 3.18

Please note RNA data suffers from contamination. Unmapped RNA reads are hitting organisms in the target order.
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28824 14566 50.5%
Ests est.fasta 234264812 229965405 98.2%

Gene Models FilteredModels1
length (bp) of: average median
gene 1741 1490
transcript 1708 1469
exon 1447 1260
intron 185 87
protein length (aa) 481 396
exons per gene 1.18 1
# of gene models 5906



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.