Info • Microdochium bolleyi J235TASD1 v1.0

Status

[Nov 2015] The Microdochium bolleyi J235TASD1 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011)
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Microdochium bolleyi v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.84
Sequencing read coverage depth 136.2x
# of contigs 215
# of scaffolds 173
# of scaffolds >= 2Kbp 151
Scaffold N50 6
Scaffold L50 (Mbp) 1.33
# of gaps 42
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 4.33, 4.04, 3.98


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 18493 18229 98.6%
Ests est.fasta 51425875 46337889 90.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1704 1516
transcript 1528 1344
exon 574 354
intron 107 76
description:
protein length (aa) 443 377
exons per gene 2.66 2
# of gene models 13177


Collaborators

Joseph Spatafora, Oregon State University, USA
Aaron David an the Seabloom lab, University of Minnesota

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

David AS, Haridas S, LaButti K, Lim J, Lipzen A, Wang M, Barry K, Grigoriev IV, Spatafora JW, May G
Draft Genome Sequence of Microdochium bolleyi, a Dark Septate Fungal Endophyte of Beach Grass.
Genome Announc. 2016 Apr 28;4(2):. doi: 10.1128/genomeA.00270-16

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.