Info • Micractinium conductrix SAG 241.80

Status

The genome sequence and gene models of Micractinium conductrix SAG 241.80 have not been determined by the JGI, but were downloaded from NCBI on October 13, 2019. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by the JGI and is therefore not automatically updated.

Summary statistics for the Micractinium conductrix SAG 241.80 release are below.
Genome Assembly
Genome Assembly size (Mbp) 60.77
Sequencing read coverage depth 57.0x
# of contigs 298
# of scaffolds 298
# of scaffolds >= 2Kbp 296
Scaffold N50 13
Scaffold L50 (Mbp) 1.21
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.96, 4.28, 2.73


Gene Models ExternalModels
length (bp) of: average median
gene 5399 4072
transcript 2152 1680
exon 151 106
intron 247 200
description:
protein length (aa) 649 492
exons per gene 14.26 11
# of gene models 10070


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Arriola MB, Velmurugan N, Zhang Y, Plunkett MH, Hondzo H, Barney BM
Genome sequences of Chlorella sorokiniana UTEX 1602 and Micractinium conductrix SAG 241.80: implications to maltose excretion by a green alga.
Plant J. 2018 Feb;93(3):566-586. doi: 10.1111/tpj.13789

Funding

This project was not sequenced at the JGI.