Info • Micractinium conductrix SAG 241.80

Status

The genome sequence and gene models of Micractinium conductrix SAG 241.80 have not been determined by the JGI, but were downloaded from NCBI on October 13, 2019. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 1,331 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes. The mitochondrial genome assembly is also available in the Downloads tab.

Genome Assembly
Genome Assembly size (Mbp) 60.77
Sequencing read coverage depth 57.0x
# of contigs 298
# of scaffolds 298
# of scaffolds >= 2Kbp 296
Scaffold N50 13
Scaffold L50 (Mbp) 1.21
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.96, 4.28, 2.73


Gene Models FilteredModels1
length (bp) of: average median
gene 5298 4042
transcript 2117 1666
exon 150 106
intron 244 200
description:
protein length (aa) 639 489
exons per gene 14.14 11
# of gene models 8739


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.