Status
The genome sequence and gene models of Microbotryum intermedium 1389 BM 12 12 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for the Microbotryum intermedium 1389
BM 12 12 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 23.46 |
| Sequencing read coverage depth | |
| # of contigs | 24 |
| # of scaffolds | 24 |
| # of scaffolds >= 2Kbp | 24 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 1.64 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.98, 2.53, 1.96 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2022 | 1756 |
| transcript | 1631 | 1326 |
| exon | 326 | 169 |
| intron | 100 | 84 |
| description: | ||
| protein length (aa) | 544 | 442 |
| exons per gene | 5.00 | 5 |
| # of gene models | 8142 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Branco S, Badouin H, RodrÃguez de la Vega RC, Gouzy J, Carpentier F, Aguileta G, Siguenza S, Brandenburg JT, Coelho MA, Hood ME, Giraud T
Evolutionary strata on young mating-type chromosomes despite the lack of sexual antagonism.
Proc Natl Acad Sci U S A. 2017 Jul 3;114(27):7067-7072. doi: 10.1073/pnas.1701658114
Branco S, Badouin H, RodrÃguez de la Vega RC, Gouzy J, Carpentier F, Aguileta G, Siguenza S, Brandenburg JT, Coelho MA, Hood ME, Giraud T
Evolutionary strata on young mating-type chromosomes despite the lack of sexual antagonism.
Proc Natl Acad Sci U S A. 2017 Jul 3;114(27):7067-7072. doi: 10.1073/pnas.1701658114
Links
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Pucciniomycotina
Funding
This project was not sequenced at the JGI.
