Info • Microthyrium microscopicum CBS 115976 v1.0

Status

[July 2015] The Microthyrium microscopicum CBS 115976 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Microthyrium microscopicum CBS 115976 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.12
Sequencing read coverage depth 72.9x
# of contigs 265
# of scaffolds 58
# of scaffolds >= 2Kbp 32
Scaffold N50 6
Scaffold L50 (Mbp) 2.51
# of gaps 207
% of scaffold length in gaps 0.7%
Three largest Scaffolds (Mbp) 4.55, 4.50, 2.91


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 25151 25039 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1694 1484
transcript 1555 1356
exon 551 338
intron 78 55
description:
protein length (aa) 442 368
exons per gene 2.82 2
# of gene models 12494


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.