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Info • Micromonas pusilla CCMP1545
Please note that this organism is for archival use only. Please see the current Micromonas pusilla CCMP1545 site for the latest data and information.

Status

v2.0(February 15, 2008): The assembly release version 2.0 of whole shotgun reads was contructed with the Arachne assembler. The genome is in 21 scaffolds with a total size of 21,958,260 bp. The genome is very complete with 19 chromosomes completed telomere to telomere. There are also 2 additional scaffolds which do not appear to be organelle by BLAST and could fit inside some of the larger gaps in the main genome. These are named scaffold_20 and scaffold_21. The current release, v2.0, includes a total of 10,575 gene models predicted and functionally annotated using the JGI annotation pipeline.

v1.0: The assembly release version 1.0 of whole genome shotgun reads was constructed with the JGI assembler, Jazz, using paired end sequencing reads at a coverage of ~7.96X. After trimming for vector and quality, 267,926 reads assembled into 58 main genome scaffolds totaling 21.9 MB. Roughly half of the genome is contained in 8 scaffolds all at least 1.2 MB in length. The v.1.0 assembly includes a total of 8616 gene models predicted and functionally annotated using the JGI annotation pipeline.

Collaborators

References

Alexandra Z. Worden, Jae-Hyeok Lee, Thomas Mock, Pierre Rouze, Melinda P. Simmons, Andrea L. Aerts, Andrew E. Allen, Marie L. Cuvelier, Evelyne Derelle, Meredith V. Everett, Elodie Foulon, Jane Grimwood, Heidrun Gundlach, Bernard Henrissat, Carolyn Napoli, Sarah M. McDonald, Micaela S. Parker, Stephane Rombauts, Aasf Salamov, Peter Von Dassow, Jonathan H. Badger, Pedro M. Coutinho, Elif Demir, Inna Dubchak, Chelle Gentemann, Wenche Eikrem, Jill E. Gready, Uwe John, William Lanier, Erika A. Lindquist, Susan Lucas, Klaus F. X. Mayer, Herve Moreau, Fabrice Not, Robert Otillar, Olivier Panaud, Jasmyn Pangilinan, Ian Paulsen, Benoit Piegu, Aaron Poliakov, Steven Robbens, Jeremy Schmutz, Eve Toulza, Tania Wyss, Alexander Zelensky, Kemin Zhou, E. Virginia Armbrust, Debashish Bhattacharya, Ursula W. Goodenough, Yves Van de Peer, Igor V. Grigoriev Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas. Science. 2009 April 10;324(5924):268-272

Links

Funding

This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No. DE-AC02-06NA25396.

Funding for preparation of cell lines, genomic and transcriptomic material as well as manual annotation was provided by a Gordon & Betty Moore Young Investigator Award in Marine Microbiology to A.Z. Worden.