Info • Microdiplodia sp. AK1800 v1.0


[October 2018] The Microdiplodia sp. AK1800 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Microdiplodia sp. AK1800 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.43
Sequencing read coverage depth 295.28x
# of contigs 168
# of scaffolds 168
# of scaffolds >= 2Kbp 168
Scaffold N50 21
Scaffold L50 (Mbp) 0.63
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.41, 1.33, 1.30

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 50273 47168 93.8%
Ests est.fasta 141821002 137105865 96.7%

Gene Models FilteredModels1
length (bp) of: average median
gene 1810 1585
transcript 1654 1437
exon 568 355
intron 84 59
protein length (aa) 469 390
exons per gene 2.91 3
# of gene models 11559


Jana U'Ren, University of Arizona, AZ

Betsy Arnold, University of Arizona, AZ


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.