Info • Microdochium trichocladiopsis MPI-CAGE-CH-0230 v1.0

Status

[May 2017] The Microdochium trichocladiopsis MPI-CAGE-CH-0230 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Microdochium trichocladiopsis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.28
Sequencing read coverage depth 94.95x
# of contigs 26
# of scaffolds 26
# of scaffolds >= 2Kbp 26
Scaffold N50 6
Scaffold L50 (Mbp) 3.46
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.26, 4.66, 4.62


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35167 33934 96.5%
Ests est.fasta 72185156 72125752 99.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1711 1482
transcript 1527 1305
exon 579 363
intron 114 76
description:
protein length (aa) 442 366
exons per gene 2.64 2
# of gene models 16025


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.