Status
The genome sequence and annotations for Microbotryum violaceum p1A1 Lamole v1.0 were acquired from The Broad Institute on July 6th, 2015.
Summary statistics for the Microbotryum violaceum p1A1
Lamole v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 26.14 |
| Sequencing read coverage depth | |
| # of contigs | 1888 |
| # of scaffolds | 1231 |
| # of scaffolds >= 2Kbp | 319 |
| Scaffold N50 | 42 |
| Scaffold L50 (Mbp) | 0.19 |
| # of gaps | 657 |
| % of scaffold length in gaps | 3.6% |
| Three largest Scaffolds (Mbp) | 0.87, 0.67, 0.63 |
| Gene Models | BroadModels | |
| length (bp) of: | average | median |
| gene | 2429 | 2183 |
| transcript | 1959 | 1686 |
| exon | 347 | 196 |
| intron | 103 | 82 |
| description: | ||
| protein length (aa) | 537 | 439 |
| exons per gene | 5.64 | 5 |
| # of gene models | 7819 |
Funding
This project was not sequenced at the JGI.
