Info • Mitosporidium daphniae UGP3


The genome sequence and gene prediction of Mitosporidium daphniae UPG3 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on May 28, 2018. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

JGI tools were used to automatically annotate predicted proteins. These tools converted all IUPAC-recognized ambiguous bases to Ns during the annotation process. Therefore the assembly and protein set available on the Download page is slightly modified from those which are available from NCBI.

Summary statistics for the Mitosporidium daphniae UGP3 release are below.
Genome Assembly
Genome Assembly size (Mbp) 5.64
Sequencing read coverage depth
# of contigs 612
# of scaffolds 612
# of scaffolds >= 2Kbp 278
Scaffold N50 51
Scaffold L50 (Mbp) 0.03
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.12, 0.10, 0.10

Gene Models ExternalModels
length (bp) of: average median
gene 1252 987
transcript 1151 888
exon 508 299
intron 82 43
protein length (aa) 383 296
exons per gene 2.26 2
# of gene models 3330

Genome Reference(s)



This project was not sequenced at the JGI.