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Info • Mixia osmundae IAM 14324 v1.0

Status

Version 1.0. February 2012. This draft genome assembly of Mixia osmundae was sequenced using Illumina technology.

Summary statistics for the Mixia osmundae IAM 14324 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 13.63
Sequencing read coverage depth 150.9x
# of contigs 204
# of scaffolds 156
# of scaffolds >= 2Kbp 25
Scaffold N50 5
Scaffold L50 (Mbp) 1.19
# of gaps 48
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 2.33, 1.39, 1.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNAseq ESTs assembled with RNNotator 23482 22315 95.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1837 1528
transcript 1615 1332
exon 355 184
intron 65 54
description:
protein length (aa) 500 399
exons per gene 4.54 4
# of gene models 6903


Collaborators

  • Merje Toome, Purdue University
  • Cathie Aime, Purdue University
  • Joey Spatafora, Oregon State Univerisity
  • Igor Grigoriev, DOE Joint Genome Institute

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.