Info • Mortierella alpina CK1249


This genome was sequenced at low coverage by the Joint Genome Institute (JGI), then assembled and annotated by Jason Stajich. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.
Genome Assembly
Genome Assembly size (Mbp) 36.29
Sequencing read coverage depth
# of contigs 4961
# of scaffolds 4026
# of scaffolds >= 2Kbp 2750
Scaffold N50 605
Scaffold L50 (Mbp) 0.02
# of gaps 935
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 0.09, 0.08, 0.07

Gene Models ExternalModels
length (bp) of: average median
gene 1865 1549
transcript 1452 1161
exon 377 206
intron 147 109
protein length (aa) 484 387
exons per gene 3.85 3
# of gene models 10609


Genome Reference(s)



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.