Info • Actinomortierella ambigua BC1065

Status

This genome was sequenced at low coverage by the Joint Genome Institute (JGI), then assembled and annotated by Jason Stajich. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.
Genome Assembly
Genome Assembly size (Mbp) 37.92
Sequencing read coverage depth
# of contigs 2372
# of scaffolds 2284
# of scaffolds >= 2Kbp 1376
Scaffold N50 243
Scaffold L50 (Mbp) 0.05
# of gaps 88
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.24, 0.19, 0.18


Gene Models ExternalModels
length (bp) of: average median
gene 2168 1780
transcript 1676 1317
exon 480 225
intron 199 135
description:
protein length (aa) 559 439
exons per gene 3.49 3
# of gene models 9892


Collaborators

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.